Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim56Q80VI1 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 AC130669.1-201ENSMUST00000228537 1672 ntBASIC18.12■□□□□ 0.49
Trim56Q80VI1 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Gm14494-201ENSMUST00000118786 435 ntBASIC18.12■□□□□ 0.49
Trim56Q80VI1 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Gm44945-201ENSMUST00000206764 1187 ntBASIC18.12■□□□□ 0.49
Trim56Q80VI1 AC090659.1-201ENSMUST00000224334 768 ntBASIC18.12■□□□□ 0.49
Trim56Q80VI1 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim56Q80VI1 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Gm4995-201ENSMUST00000117247 432 ntBASIC18.11■□□□□ 0.49
Trim56Q80VI1 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC18.11■□□□□ 0.49
Trim56Q80VI1 Gm15467-201ENSMUST00000120582 445 ntBASIC18.11■□□□□ 0.49
Trim56Q80VI1 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Gm5264-201ENSMUST00000190584 848 ntBASIC18.11■□□□□ 0.49
Trim56Q80VI1 Gm17968-201ENSMUST00000194902 784 ntBASIC18.11■□□□□ 0.49
Trim56Q80VI1 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
Trim56Q80VI1 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim56Q80VI1 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trim56Q80VI1 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim56Q80VI1 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim56Q80VI1 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Gm8000-201ENSMUST00000188378 592 ntBASIC18.09■□□□□ 0.49
Trim56Q80VI1 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Gm29361-201ENSMUST00000183323 2000 ntBASIC18.09■□□□□ 0.49
Trim56Q80VI1 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim56Q80VI1 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms