Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
ShhQ62226 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC14.34□□□□□ -0.11
ShhQ62226 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
ShhQ62226 Gm7222-201ENSMUST00000117512 906 ntBASIC14.34□□□□□ -0.11
ShhQ62226 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.34□□□□□ -0.11
ShhQ62226 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.34□□□□□ -0.11
ShhQ62226 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.34□□□□□ -0.11
ShhQ62226 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ShhQ62226 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
ShhQ62226 AC174742.1-201ENSMUST00000218272 304 ntBASIC14.34□□□□□ -0.11
ShhQ62226 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.34□□□□□ -0.11
ShhQ62226 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
ShhQ62226 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
ShhQ62226 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ShhQ62226 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
ShhQ62226 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ShhQ62226 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
ShhQ62226 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
ShhQ62226 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC14.33□□□□□ -0.11
ShhQ62226 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ShhQ62226 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
ShhQ62226 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
ShhQ62226 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
ShhQ62226 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 AC084391.1-201ENSMUST00000200651 141 ntBASIC14.33□□□□□ -0.12
ShhQ62226 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
ShhQ62226 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
ShhQ62226 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC14.33□□□□□ -0.12
ShhQ62226 Gm16011-201ENSMUST00000121567 2662 ntBASIC14.33□□□□□ -0.12
ShhQ62226 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
ShhQ62226 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
ShhQ62226 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ShhQ62226 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.32□□□□□ -0.12
ShhQ62226 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.32□□□□□ -0.12
ShhQ62226 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.32□□□□□ -0.12
ShhQ62226 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ShhQ62226 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms