Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Gm45293-201ENSMUST00000209754 1812 ntBASIC15.5■□□□□ 0.07
Six4Q61321 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC15.5■□□□□ 0.07
Six4Q61321 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Six4Q61321 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.5■□□□□ 0.07
Six4Q61321 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.5■□□□□ 0.07
Six4Q61321 Gm7556-201ENSMUST00000201178 1084 ntBASIC15.5■□□□□ 0.07
Six4Q61321 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.5■□□□□ 0.07
Six4Q61321 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC15.5■□□□□ 0.07
Six4Q61321 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Six4Q61321 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Six4Q61321 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Six4Q61321 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Six4Q61321 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Six4Q61321 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Six4Q61321 Gm11839-201ENSMUST00000120647 1953 ntBASIC15.49■□□□□ 0.07
Six4Q61321 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Six4Q61321 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC15.49■□□□□ 0.07
Six4Q61321 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 AC084391.1-201ENSMUST00000200651 141 ntBASIC15.49■□□□□ 0.07
Six4Q61321 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC15.49■□□□□ 0.07
Six4Q61321 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Gm45212-201ENSMUST00000205831 3403 ntBASIC15.49■□□□□ 0.07
Six4Q61321 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
Six4Q61321 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC15.49■□□□□ 0.07
Six4Q61321 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Six4Q61321 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC15.48■□□□□ 0.07
Six4Q61321 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Six4Q61321 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15.48■□□□□ 0.07
Six4Q61321 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC15.48■□□□□ 0.07
Six4Q61321 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Six4Q61321 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC15.48■□□□□ 0.07
Six4Q61321 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Six4Q61321 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.48■□□□□ 0.07
Six4Q61321 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Six4Q61321 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Six4Q61321 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Six4Q61321 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.47■□□□□ 0.07
Six4Q61321 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Six4Q61321 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Six4Q61321 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms