Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Col11a1Q61245 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Col11a1Q61245 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.01■□□□□ 0.31
Col11a1Q61245 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Col11a1Q61245 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC17.01■□□□□ 0.31
Col11a1Q61245 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col11a1Q61245 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Gm5303-201ENSMUST00000117943 1252 ntBASIC17■□□□□ 0.31
Col11a1Q61245 Gm6222-201ENSMUST00000120787 396 ntBASIC17■□□□□ 0.31
Col11a1Q61245 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC17■□□□□ 0.31
Col11a1Q61245 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
Col11a1Q61245 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
Col11a1Q61245 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC17■□□□□ 0.31
Col11a1Q61245 Gm37748-201ENSMUST00000194379 1140 ntBASIC17■□□□□ 0.31
Col11a1Q61245 Gm43630-201ENSMUST00000201550 776 ntBASIC17■□□□□ 0.31
Col11a1Q61245 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col11a1Q61245 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
Col11a1Q61245 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Col11a1Q61245 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Col11a1Q61245 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Col11a1Q61245 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.99■□□□□ 0.31
Col11a1Q61245 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Col11a1Q61245 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.99■□□□□ 0.31
Col11a1Q61245 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col11a1Q61245 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.98■□□□□ 0.31
Col11a1Q61245 Mir1938-201ENSMUST00000158746 100 ntBASIC16.98■□□□□ 0.31
Col11a1Q61245 Gm27631-201ENSMUST00000184163 466 ntBASIC16.98■□□□□ 0.31
Col11a1Q61245 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 AC156016.3-201ENSMUST00000228623 344 ntBASIC16.98■□□□□ 0.31
Col11a1Q61245 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 Gm19439-201ENSMUST00000198195 2273 ntBASIC16.98■□□□□ 0.31
Col11a1Q61245 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 Gm8131-201ENSMUST00000213783 1570 ntBASIC16.98■□□□□ 0.31
Col11a1Q61245 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
Col11a1Q61245 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC16.98■□□□□ 0.31
Col11a1Q61245 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC16.98■□□□□ 0.31
Col11a1Q61245 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.98■□□□□ 0.31
Col11a1Q61245 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC16.98■□□□□ 0.31
Col11a1Q61245 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Col11a1Q61245 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Col11a1Q61245 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Col11a1Q61245 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC16.97■□□□□ 0.31
Col11a1Q61245 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC16.97■□□□□ 0.31
Col11a1Q61245 Gm15823-201ENSMUST00000064305 670 ntBASIC16.97■□□□□ 0.31
Col11a1Q61245 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Col11a1Q61245 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col11a1Q61245 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Col11a1Q61245 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Col11a1Q61245 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC16.96■□□□□ 0.31
Col11a1Q61245 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC16.96■□□□□ 0.31
Col11a1Q61245 Gm13829-201ENSMUST00000119600 138 ntBASIC16.96■□□□□ 0.31
Col11a1Q61245 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC16.96■□□□□ 0.31
Col11a1Q61245 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col11a1Q61245 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms