Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.48■□□□□ 0.39
Usp28Q5I043 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Gm10605-202ENSMUST00000183019 3198 ntBASIC17.48■□□□□ 0.39
Usp28Q5I043 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC17.48■□□□□ 0.39
Usp28Q5I043 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.47■□□□□ 0.39
Usp28Q5I043 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Usp28Q5I043 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
Usp28Q5I043 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Usp28Q5I043 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.47■□□□□ 0.39
Usp28Q5I043 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usp28Q5I043 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Gm12895-201ENSMUST00000122214 226 ntBASIC17.46■□□□□ 0.39
Usp28Q5I043 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Gm30437-201ENSMUST00000206086 1201 ntBASIC17.46■□□□□ 0.39
Usp28Q5I043 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usp28Q5I043 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.46■□□□□ 0.39
Usp28Q5I043 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC17.46■□□□□ 0.39
Usp28Q5I043 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.38
Usp28Q5I043 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.46■□□□□ 0.38
Usp28Q5I043 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Usp28Q5I043 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Usp28Q5I043 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Gm8097-201ENSMUST00000117903 829 ntBASIC17.45■□□□□ 0.38
Usp28Q5I043 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.45■□□□□ 0.38
Usp28Q5I043 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.45■□□□□ 0.38
Usp28Q5I043 AC093926.2-201ENSMUST00000214468 1228 ntBASIC17.45■□□□□ 0.38
Usp28Q5I043 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Usp28Q5I043 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp28Q5I043 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
Usp28Q5I043 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC17.44■□□□□ 0.38
Usp28Q5I043 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.44■□□□□ 0.38
Usp28Q5I043 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.44■□□□□ 0.38
Usp28Q5I043 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.44■□□□□ 0.38
Usp28Q5I043 AC122024.2-201ENSMUST00000220086 871 ntBASIC17.44■□□□□ 0.38
Usp28Q5I043 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Usp28Q5I043 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Usp28Q5I043 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Usp28Q5I043 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Usp28Q5I043 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp28Q5I043 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Usp28Q5I043 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.43■□□□□ 0.38
Usp28Q5I043 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.43■□□□□ 0.38
Usp28Q5I043 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.43■□□□□ 0.38
Usp28Q5I043 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Usp28Q5I043 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp28Q5I043 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms