Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Gm5682-201ENSMUST00000173402 505 ntBASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Upf3bQ3ULL6 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Upf3bQ3ULL6 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Upf3bQ3ULL6 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Upf3bQ3ULL6 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Upf3bQ3ULL6 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Upf3bQ3ULL6 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Mir5131-201ENSMUST00000175426 93 ntBASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 AV026068-213ENSMUST00000223675 1171 ntBASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Upf3bQ3ULL6 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Upf3bQ3ULL6 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Gm11764-201ENSMUST00000120221 623 ntBASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Gm37153-201ENSMUST00000193637 231 ntBASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Upf3bQ3ULL6 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf3bQ3ULL6 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms