Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Gm14026-201ENSMUST00000120625 1789 ntBASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Gm4204-201ENSMUST00000110798 1231 ntBASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 AC125350.2-201ENSMUST00000224737 727 ntBASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ddb1Q3U1J4 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Gm29667-201ENSMUST00000190817 490 ntBASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Gm6180-201ENSMUST00000065243 498 ntBASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ddb1Q3U1J4 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Gm8515-201ENSMUST00000194852 576 ntBASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Gm45384-201ENSMUST00000210451 277 ntBASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddb1Q3U1J4 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Gm24543-201ENSMUST00000103867 82 ntBASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Gm11478-201ENSMUST00000117851 599 ntBASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Ighv5-13-201ENSMUST00000193550 290 ntBASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 AC238811.1-201ENSMUST00000225302 441 ntBASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 AC154231.1-201ENSMUST00000220564 2175 ntBASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddb1Q3U1J4 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Rarb-207ENSMUST00000225921 2756 ntBASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Asic1-205ENSMUST00000228185 1818 ntBASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Ddb1Q3U1J4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms