Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC16.79■□□□□ 0.28
Lig3P97386 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Lig3P97386 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.79■□□□□ 0.28
Lig3P97386 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.79■□□□□ 0.28
Lig3P97386 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.79■□□□□ 0.28
Lig3P97386 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Lig3P97386 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.79■□□□□ 0.28
Lig3P97386 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Lig3P97386 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.79■□□□□ 0.28
Lig3P97386 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Lig3P97386 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.78■□□□□ 0.28
Lig3P97386 Mir3113-201ENSMUST00000175478 76 ntBASIC16.78■□□□□ 0.28
Lig3P97386 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC16.78■□□□□ 0.28
Lig3P97386 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Lig3P97386 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.78■□□□□ 0.28
Lig3P97386 Gm37736-201ENSMUST00000193564 2802 ntBASIC16.78■□□□□ 0.28
Lig3P97386 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Lig3P97386 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
Lig3P97386 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.77■□□□□ 0.28
Lig3P97386 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
Lig3P97386 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
Lig3P97386 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
Lig3P97386 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC16.77■□□□□ 0.28
Lig3P97386 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Chchd1-203ENSMUST00000224633 557 ntBASIC16.77■□□□□ 0.28
Lig3P97386 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Lig3P97386 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.77■□□□□ 0.27
Lig3P97386 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lig3P97386 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Lig3P97386 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Lig3P97386 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lig3P97386 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Lig3P97386 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Lig3P97386 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.76■□□□□ 0.27
Lig3P97386 Gm4913-201ENSMUST00000117075 1290 ntBASIC16.76■□□□□ 0.27
Lig3P97386 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Lig3P97386 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.76■□□□□ 0.27
Lig3P97386 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.76■□□□□ 0.27
Lig3P97386 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.76■□□□□ 0.27
Lig3P97386 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Lig3P97386 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Lig3P97386 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.75■□□□□ 0.27
Lig3P97386 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.75■□□□□ 0.27
Lig3P97386 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 Gm7222-201ENSMUST00000117512 906 ntBASIC16.75■□□□□ 0.27
Lig3P97386 Gm11780-201ENSMUST00000136880 516 ntBASIC16.75■□□□□ 0.27
Lig3P97386 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
Lig3P97386 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
Lig3P97386 Mir8117-201ENSMUST00000184773 107 ntBASIC16.75■□□□□ 0.27
Lig3P97386 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.75■□□□□ 0.27
Lig3P97386 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Lig3P97386 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC16.75■□□□□ 0.27
Lig3P97386 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms