Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Tpm1P58771 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Tpm1P58771 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Tpm1P58771 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Tpm1P58771 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Tpm1P58771 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.2■□□□□ 0.34
Tpm1P58771 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Tpm1P58771 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Tpm1P58771 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Tpm1P58771 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Tpm1P58771 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC17.19■□□□□ 0.34
Tpm1P58771 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Tpm1P58771 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.19■□□□□ 0.34
Tpm1P58771 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Tpm1P58771 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.19■□□□□ 0.34
Tpm1P58771 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.19■□□□□ 0.34
Tpm1P58771 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Gm45058-201ENSMUST00000205810 766 ntBASIC17.19■□□□□ 0.34
Tpm1P58771 Gm18959-201ENSMUST00000208954 655 ntBASIC17.19■□□□□ 0.34
Tpm1P58771 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC17.19■□□□□ 0.34
Tpm1P58771 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Tpm1P58771 AC148324.1-201ENSMUST00000219034 4240 ntBASIC17.19■□□□□ 0.34
Tpm1P58771 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Tpm1P58771 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC17.18■□□□□ 0.34
Tpm1P58771 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Tpm1P58771 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.18■□□□□ 0.34
Tpm1P58771 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC17.18■□□□□ 0.34
Tpm1P58771 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.18■□□□□ 0.34
Tpm1P58771 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC17.18■□□□□ 0.34
Tpm1P58771 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Tpm1P58771 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC17.18■□□□□ 0.34
Tpm1P58771 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Tpm1P58771 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Tpm1P58771 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC17.17■□□□□ 0.34
Tpm1P58771 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Tpm1P58771 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Tpm1P58771 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Gm13559-201ENSMUST00000120476 863 ntBASIC17.17■□□□□ 0.34
Tpm1P58771 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.17■□□□□ 0.34
Tpm1P58771 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Tpm1P58771 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Mir6404-201ENSMUST00000183699 94 ntBASIC17.17■□□□□ 0.34
Tpm1P58771 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Tpm1P58771 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Tpm1P58771 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Tpm1P58771 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Tpm1P58771 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Tpm1P58771 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Tpm1P58771 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Tpm1P58771 Wnt10b-206ENSMUST00000228546 2709 ntBASIC17.16■□□□□ 0.34
Tpm1P58771 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Tpm1P58771 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Tpm1P58771 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Tpm1P58771 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.16■□□□□ 0.34
Tpm1P58771 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
Tpm1P58771 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms