Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col1a1P11087 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Col1a1P11087 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Gm14127-201ENSMUST00000117906 678 ntBASIC17.85■□□□□ 0.45
Col1a1P11087 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC17.85■□□□□ 0.45
Col1a1P11087 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC17.85■□□□□ 0.45
Col1a1P11087 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC17.85■□□□□ 0.45
Col1a1P11087 AC130829.1-201ENSMUST00000221548 494 ntBASIC17.85■□□□□ 0.45
Col1a1P11087 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.85■□□□□ 0.45
Col1a1P11087 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col1a1P11087 AC131743.5-201ENSMUST00000220775 1618 ntBASIC17.84■□□□□ 0.45
Col1a1P11087 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
Col1a1P11087 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC17.84■□□□□ 0.45
Col1a1P11087 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC17.84■□□□□ 0.45
Col1a1P11087 AC158529.1-201ENSMUST00000223618 239 ntBASIC17.84■□□□□ 0.45
Col1a1P11087 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col1a1P11087 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Col1a1P11087 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Col1a1P11087 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC17.83■□□□□ 0.45
Col1a1P11087 Gm15593-201ENSMUST00000122085 1008 ntBASIC17.83■□□□□ 0.45
Col1a1P11087 Gm9719-201ENSMUST00000162765 543 ntBASIC17.83■□□□□ 0.45
Col1a1P11087 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC17.83■□□□□ 0.45
Col1a1P11087 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.83■□□□□ 0.45
Col1a1P11087 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col1a1P11087 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col1a1P11087 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col1a1P11087 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col1a1P11087 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.83■□□□□ 0.44
Col1a1P11087 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.83■□□□□ 0.44
Col1a1P11087 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col1a1P11087 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.83■□□□□ 0.44
Col1a1P11087 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col1a1P11087 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC17.83■□□□□ 0.44
Col1a1P11087 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Col1a1P11087 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Gm28631-201ENSMUST00000190740 334 ntBASIC17.82■□□□□ 0.44
Col1a1P11087 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC17.82■□□□□ 0.44
Col1a1P11087 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.82■□□□□ 0.44
Col1a1P11087 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC17.82■□□□□ 0.44
Col1a1P11087 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col1a1P11087 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Col1a1P11087 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Col1a1P11087 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col1a1P11087 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col1a1P11087 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
Col1a1P11087 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms