Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Hoxd3P09027 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Hoxd3P09027 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Gm11873-201ENSMUST00000117877 1304 ntBASIC11.97□□□□□ -0.49
Hoxd3P09027 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Gm9727-201ENSMUST00000161387 555 ntBASIC11.97□□□□□ -0.49
Hoxd3P09027 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Gm18489-201ENSMUST00000172565 551 ntBASIC11.97□□□□□ -0.49
Hoxd3P09027 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 AC131709.1-201ENSMUST00000224731 1180 ntBASIC11.97□□□□□ -0.49
Hoxd3P09027 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Hoxd3P09027 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Hoxd3P09027 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC11.96□□□□□ -0.49
Hoxd3P09027 Gm11594-201ENSMUST00000122313 162 ntBASIC11.96□□□□□ -0.49
Hoxd3P09027 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Gm5253-201ENSMUST00000187104 1025 ntBASIC11.96□□□□□ -0.49
Hoxd3P09027 Gm37935-201ENSMUST00000192012 982 ntBASIC11.96□□□□□ -0.49
Hoxd3P09027 Gm2213-201ENSMUST00000197485 688 ntBASIC11.96□□□□□ -0.49
Hoxd3P09027 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Hoxd3P09027 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Hoxd3P09027 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hoxd3P09027 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
Hoxd3P09027 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Hoxd3P09027 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Hoxd3P09027 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hoxd3P09027 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC11.96□□□□□ -0.5
Hoxd3P09027 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hoxd3P09027 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Hoxd3P09027 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hoxd3P09027 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Hoxd3P09027 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Hoxd3P09027 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC11.95□□□□□ -0.5
Hoxd3P09027 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms