Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Gm5049-201ENSMUST00000195878 1590 ntBASIC18.21■□□□□ 0.51
Col3a1P08121 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col3a1P08121 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.21■□□□□ 0.51
Col3a1P08121 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC18.2■□□□□ 0.5
Col3a1P08121 Mir7023-201ENSMUST00000185093 64 ntBASIC18.2■□□□□ 0.5
Col3a1P08121 Gm29541-201ENSMUST00000191351 678 ntBASIC18.2■□□□□ 0.5
Col3a1P08121 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC18.2■□□□□ 0.5
Col3a1P08121 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC18.2■□□□□ 0.5
Col3a1P08121 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col3a1P08121 Gm24158-201ENSMUST00000175263 71 ntBASIC18.2■□□□□ 0.5
Col3a1P08121 Gm27920-201ENSMUST00000183953 96 ntBASIC18.2■□□□□ 0.5
Col3a1P08121 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Col3a1P08121 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
Col3a1P08121 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.19■□□□□ 0.5
Col3a1P08121 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
Col3a1P08121 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC18.19■□□□□ 0.5
Col3a1P08121 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Col3a1P08121 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col3a1P08121 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC18.18■□□□□ 0.5
Col3a1P08121 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Col3a1P08121 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Gm13015-201ENSMUST00000118674 204 ntBASIC18.18■□□□□ 0.5
Col3a1P08121 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC18.18■□□□□ 0.5
Col3a1P08121 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.18■□□□□ 0.5
Col3a1P08121 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.18■□□□□ 0.5
Col3a1P08121 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col3a1P08121 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Gm11543-201ENSMUST00000120758 370 ntBASIC18.17■□□□□ 0.5
Col3a1P08121 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC18.17■□□□□ 0.5
Col3a1P08121 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC18.17■□□□□ 0.5
Col3a1P08121 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC18.17■□□□□ 0.5
Col3a1P08121 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Col3a1P08121 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC18.17■□□□□ 0.5
Col3a1P08121 AC124732.2-201ENSMUST00000221977 316 ntBASIC18.17■□□□□ 0.5
Col3a1P08121 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col3a1P08121 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms