Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Gm12017-201ENSMUST00000122453 1003 ntBASIC14.82□□□□□ -0.04
Cacna1bO55017 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.82□□□□□ -0.04
Cacna1bO55017 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Cacna1bO55017 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Cacna1bO55017 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Cacna1bO55017 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Cacna1bO55017 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.82□□□□□ -0.04
Cacna1bO55017 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Cacna1bO55017 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Cacna1bO55017 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Gm8318-201ENSMUST00000182954 872 ntBASIC14.81□□□□□ -0.04
Cacna1bO55017 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC14.81□□□□□ -0.04
Cacna1bO55017 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.81□□□□□ -0.04
Cacna1bO55017 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Cacna1bO55017 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Cacna1bO55017 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Cacna1bO55017 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm43702-201ENSMUST00000198772 2546 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm24158-201ENSMUST00000175263 71 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Cacna1bO55017 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm18187-201ENSMUST00000196476 984 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Cacna1bO55017 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Cacna1bO55017 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm16198-201ENSMUST00000118766 670 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm12151-201ENSMUST00000121374 290 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 AC130829.1-201ENSMUST00000221548 494 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 AC124732.1-201ENSMUST00000221551 910 ntBASIC14.8□□□□□ -0.04
Cacna1bO55017 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Cacna1bO55017 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Cacna1bO55017 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Cacna1bO55017 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC14.79□□□□□ -0.04
Cacna1bO55017 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.79□□□□□ -0.04
Cacna1bO55017 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Cacna1bO55017 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.79□□□□□ -0.04
Cacna1bO55017 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Cacna1bO55017 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.79□□□□□ -0.04
Cacna1bO55017 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.79□□□□□ -0.04
Cacna1bO55017 Mir8102-201ENSMUST00000184148 139 ntBASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 87 ms