Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Hmgb3O54879 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Hmgb3O54879 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Hmgb3O54879 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Hmgb3O54879 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Hmgb3O54879 Ankrd11-202ENSMUST00000098334 8455 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Hmgb3O54879 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
Hmgb3O54879 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Hmgb3O54879 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Hmgb3O54879 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Hmgb3O54879 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Hmgb3O54879 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Hmgb3O54879 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC12.77□□□□□ -0.36
Hmgb3O54879 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Gm44450-201ENSMUST00000199528 114 ntBASIC12.77□□□□□ -0.37
Hmgb3O54879 Gm18421-201ENSMUST00000204122 625 ntBASIC12.77□□□□□ -0.37
Hmgb3O54879 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Gm16042-201ENSMUST00000204813 1247 ntBASIC12.77□□□□□ -0.37
Hmgb3O54879 Otx2os1-204ENSMUST00000227221 751 ntBASIC12.77□□□□□ -0.37
Hmgb3O54879 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC12.77□□□□□ -0.37
Hmgb3O54879 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Hmgb3O54879 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC12.77□□□□□ -0.37
Hmgb3O54879 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Gm37728-201ENSMUST00000195025 2292 ntBASIC12.77□□□□□ -0.37
Hmgb3O54879 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hmgb3O54879 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC12.76□□□□□ -0.37
Hmgb3O54879 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Hmgb3O54879 Wnt10b-206ENSMUST00000228546 2709 ntBASIC12.76□□□□□ -0.37
Hmgb3O54879 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Hmgb3O54879 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Hmgb3O54879 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hmgb3O54879 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.76□□□□□ -0.37
Hmgb3O54879 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Hmgb3O54879 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC12.75□□□□□ -0.37
Hmgb3O54879 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC12.75□□□□□ -0.37
Hmgb3O54879 Gm12441-201ENSMUST00000121806 588 ntBASIC12.75□□□□□ -0.37
Hmgb3O54879 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Hmgb3O54879 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC12.75□□□□□ -0.37
Hmgb3O54879 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
Hmgb3O54879 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC12.75□□□□□ -0.37
Hmgb3O54879 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Hmgb3O54879 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Hmgb3O54879 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms