Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ube4aE9Q735 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Gm10253-201ENSMUST00000194270 940 ntBASIC18.41■□□□□ 0.54
Ube4aE9Q735 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ube4aE9Q735 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 AC166341.4-201ENSMUST00000220625 123 ntBASIC18.4■□□□□ 0.54
Ube4aE9Q735 AC131187.1-201ENSMUST00000224567 809 ntBASIC18.4■□□□□ 0.54
Ube4aE9Q735 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
Ube4aE9Q735 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Ube4aE9Q735 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ube4aE9Q735 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ube4aE9Q735 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Gm14057-201ENSMUST00000120631 482 ntBASIC18.39■□□□□ 0.53
Ube4aE9Q735 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Ube4aE9Q735 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Gm22175-201ENSMUST00000175007 78 ntBASIC18.39■□□□□ 0.53
Ube4aE9Q735 Gm24158-201ENSMUST00000175263 71 ntBASIC18.39■□□□□ 0.53
Ube4aE9Q735 Gm7774-201ENSMUST00000200064 533 ntBASIC18.39■□□□□ 0.53
Ube4aE9Q735 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ube4aE9Q735 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.38■□□□□ 0.53
Ube4aE9Q735 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ube4aE9Q735 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms