Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.03■□□□□ -0
Chd3B1AR17 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Chd3B1AR17 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Chd3B1AR17 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Chd3B1AR17 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Gm14701-201ENSMUST00000117156 348 ntBASIC15.02■□□□□ -0
Chd3B1AR17 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC15.02■□□□□ -0
Chd3B1AR17 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.02■□□□□ -0
Chd3B1AR17 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.02■□□□□ -0
Chd3B1AR17 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC15.02■□□□□ -0
Chd3B1AR17 Gm10154-201ENSMUST00000084445 354 ntBASIC15.02■□□□□ -0
Chd3B1AR17 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Chd3B1AR17 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.02■□□□□ -0
Chd3B1AR17 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Chd3B1AR17 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC15.02■□□□□ -0
Chd3B1AR17 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.02□□□□□ -0.01
Chd3B1AR17 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Chd3B1AR17 Gm13332-201ENSMUST00000120451 1398 ntBASIC15.02□□□□□ -0.01
Chd3B1AR17 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC15.02□□□□□ -0.01
Chd3B1AR17 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Chd3B1AR17 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Chd3B1AR17 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Chd3B1AR17 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Chd3B1AR17 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Chd3B1AR17 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Chd3B1AR17 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Chd3B1AR17 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Chd3B1AR17 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Chd3B1AR17 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC15.01□□□□□ -0.01
Chd3B1AR17 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Mir6990-201ENSMUST00000183724 91 ntBASIC15.01□□□□□ -0.01
Chd3B1AR17 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Chd3B1AR17 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Chd3B1AR17 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15□□□□□ -0.01
Chd3B1AR17 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC15□□□□□ -0.01
Chd3B1AR17 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15□□□□□ -0.01
Chd3B1AR17 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Chd3B1AR17 Gm10499-201ENSMUST00000174094 934 ntBASIC15□□□□□ -0.01
Chd3B1AR17 Mir7036b-201ENSMUST00000184791 63 ntBASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms