Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Gm13223-201ENSMUST00000118609 747 ntBASIC18.1■□□□□ 0.49
Scn11aQ9R053 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
Scn11aQ9R053 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Scn11aQ9R053 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Scn11aQ9R053 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC18.09■□□□□ 0.49
Scn11aQ9R053 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Scn11aQ9R053 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Scn11aQ9R053 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Scn11aQ9R053 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Scn11aQ9R053 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC18.08■□□□□ 0.49
Scn11aQ9R053 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Scn11aQ9R053 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Scn11aQ9R053 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Cdk7-205ENSMUST00000225990 1159 ntBASIC18.07■□□□□ 0.48
Scn11aQ9R053 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC18.07■□□□□ 0.48
Scn11aQ9R053 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.07■□□□□ 0.48
Scn11aQ9R053 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Gm18737-201ENSMUST00000173594 937 ntBASIC18.07■□□□□ 0.48
Scn11aQ9R053 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC18.07■□□□□ 0.48
Scn11aQ9R053 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Scn11aQ9R053 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC18.06■□□□□ 0.48
Scn11aQ9R053 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Scn11aQ9R053 AC093043.3-201ENSMUST00000226531 2273 ntBASIC18.06■□□□□ 0.48
Scn11aQ9R053 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Scn11aQ9R053 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms