Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Gm6728-201ENSMUST00000178117 1065 ntBASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Lima1Q9ERG0 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Gm11950-201ENSMUST00000121615 838 ntBASIC15.25■□□□□ 0.03
Lima1Q9ERG0 AA414768-201ENSMUST00000121924 1257 ntBASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 AC158538.1-201ENSMUST00000225870 294 ntBASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Lima1Q9ERG0 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 AC125350.1-201ENSMUST00000225115 903 ntBASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Lima1Q9ERG0 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms