Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm15590-201ENSMUST00000078419 552 ntBASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Gm9867-201ENSMUST00000192212 2647 ntBASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.32□□□□□ -0.12
Cdc40Q9DC48 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Gm8000-201ENSMUST00000188378 592 ntBASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdc40Q9DC48 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Gm16011-201ENSMUST00000121567 2662 ntBASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdc40Q9DC48 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Gm6550-201ENSMUST00000187574 993 ntBASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Gm37935-201ENSMUST00000192012 982 ntBASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Gm2213-201ENSMUST00000197485 688 ntBASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdc40Q9DC48 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms