Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
Usp11Q99K46 Gm1818-201ENSMUST00000169406 1184 ntBASIC16.28■□□□□ 0.2
Usp11Q99K46 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Usp11Q99K46 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Usp11Q99K46 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Usp11Q99K46 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Usp11Q99K46 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp11Q99K46 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp11Q99K46 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Usp11Q99K46 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
Usp11Q99K46 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp11Q99K46 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.27■□□□□ 0.2
Usp11Q99K46 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC16.27■□□□□ 0.2
Usp11Q99K46 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC16.27■□□□□ 0.2
Usp11Q99K46 Gm17971-201ENSMUST00000190239 806 ntBASIC16.27■□□□□ 0.2
Usp11Q99K46 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.27■□□□□ 0.2
Usp11Q99K46 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp11Q99K46 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC16.27■□□□□ 0.2
Usp11Q99K46 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Usp11Q99K46 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.27■□□□□ 0.2
Usp11Q99K46 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp11Q99K46 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp11Q99K46 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Usp11Q99K46 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Usp11Q99K46 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.26■□□□□ 0.19
Usp11Q99K46 Gm15165-201ENSMUST00000118140 502 ntBASIC16.26■□□□□ 0.19
Usp11Q99K46 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC16.26■□□□□ 0.19
Usp11Q99K46 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.26■□□□□ 0.19
Usp11Q99K46 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Usp11Q99K46 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Usp11Q99K46 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Mir6404-201ENSMUST00000183699 94 ntBASIC16.25■□□□□ 0.19
Usp11Q99K46 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC16.25■□□□□ 0.19
Usp11Q99K46 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Usp11Q99K46 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms