Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC21.07■□□□□ 0.96
Usp40Q8BWR4 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Gm6018-201ENSMUST00000216090 1306 ntBASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 AC159114.1-201ENSMUST00000220349 266 ntBASIC21.06■□□□□ 0.96
Usp40Q8BWR4 AC140397.2-201ENSMUST00000224213 834 ntBASIC21.06■□□□□ 0.96
Usp40Q8BWR4 CT009510.1-201ENSMUST00000227972 270 ntBASIC21.06■□□□□ 0.96
Usp40Q8BWR4 AC158982.1-201ENSMUST00000228377 901 ntBASIC21.06■□□□□ 0.96
Usp40Q8BWR4 App-207ENSMUST00000227737 2827 ntBASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp40Q8BWR4 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp40Q8BWR4 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Gm25948-201ENSMUST00000175334 112 ntBASIC21.04■□□□□ 0.96
Usp40Q8BWR4 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
Usp40Q8BWR4 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 AC131187.1-201ENSMUST00000224567 809 ntBASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp40Q8BWR4 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Usp40Q8BWR4 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms