Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col7a1Q63870 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC12.59□□□□□ -0.39
Col7a1Q63870 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col7a1Q63870 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col7a1Q63870 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col7a1Q63870 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Col7a1Q63870 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.58□□□□□ -0.39
Col7a1Q63870 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.39
Col7a1Q63870 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Col7a1Q63870 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Col7a1Q63870 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.58□□□□□ -0.4
Col7a1Q63870 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC12.58□□□□□ -0.4
Col7a1Q63870 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Col7a1Q63870 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Col7a1Q63870 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.58□□□□□ -0.4
Col7a1Q63870 Gm8597-201ENSMUST00000191525 1109 ntBASIC12.58□□□□□ -0.4
Col7a1Q63870 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.58□□□□□ -0.4
Col7a1Q63870 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.58□□□□□ -0.4
Col7a1Q63870 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Col7a1Q63870 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC12.58□□□□□ -0.4
Col7a1Q63870 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Col7a1Q63870 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Gm29199-201ENSMUST00000187766 775 ntBASIC12.57□□□□□ -0.4
Col7a1Q63870 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Gm6091-201ENSMUST00000098307 165 ntBASIC12.57□□□□□ -0.4
Col7a1Q63870 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC12.57□□□□□ -0.4
Col7a1Q63870 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 Gm22018-201ENSMUST00000104357 131 ntBASIC12.57□□□□□ -0.4
Col7a1Q63870 Gm22902-201ENSMUST00000158488 302 ntBASIC12.57□□□□□ -0.4
Col7a1Q63870 Gm27839-201ENSMUST00000184242 106 ntBASIC12.57□□□□□ -0.4
Col7a1Q63870 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC12.57□□□□□ -0.4
Col7a1Q63870 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col7a1Q63870 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Gm2495-201ENSMUST00000191160 466 ntBASIC12.56□□□□□ -0.4
Col7a1Q63870 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.56□□□□□ -0.4
Col7a1Q63870 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Gm10012-201ENSMUST00000078252 192 ntBASIC12.56□□□□□ -0.4
Col7a1Q63870 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Gm7561-201ENSMUST00000211203 886 ntBASIC12.56□□□□□ -0.4
Col7a1Q63870 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Col7a1Q63870 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col7a1Q63870 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col7a1Q63870 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col7a1Q63870 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col7a1Q63870 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC12.55□□□□□ -0.4
Col7a1Q63870 Gm29787-201ENSMUST00000222129 849 ntBASIC12.55□□□□□ -0.4
Col7a1Q63870 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col7a1Q63870 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col7a1Q63870 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col7a1Q63870 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col7a1Q63870 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms