Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Trim28Q62318 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC19.91■□□□□ 0.78
Trim28Q62318 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Trim28Q62318 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Trim28Q62318 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Trim28Q62318 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Gm15920-201ENSMUST00000118998 402 ntBASIC19.9■□□□□ 0.78
Trim28Q62318 Gm15593-201ENSMUST00000122085 1008 ntBASIC19.9■□□□□ 0.78
Trim28Q62318 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC19.9■□□□□ 0.78
Trim28Q62318 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim28Q62318 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC19.9■□□□□ 0.78
Trim28Q62318 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Trim28Q62318 Gm22065-201ENSMUST00000103753 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm22066-201ENSMUST00000103761 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24932-201ENSMUST00000103763 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24115-201ENSMUST00000103799 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm22190-201ENSMUST00000103827 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm22191-201ENSMUST00000103831 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24721-201ENSMUST00000103849 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm28018-201ENSMUST00000103869 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm26399-201ENSMUST00000103937 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC19.89■□□□□ 0.77
Trim28Q62318 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Gm25349-201ENSMUST00000177728 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm23616-201ENSMUST00000177797 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm25871-201ENSMUST00000177816 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24752-201ENSMUST00000178240 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24496-201ENSMUST00000178287 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm25649-201ENSMUST00000178476 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm25548-201ENSMUST00000178681 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm23147-201ENSMUST00000178841 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm26095-201ENSMUST00000179270 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm22171-201ENSMUST00000179283 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm23936-201ENSMUST00000179354 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm22619-201ENSMUST00000179516 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm25255-201ENSMUST00000179579 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24755-201ENSMUST00000179691 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm26506-201ENSMUST00000179692 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm25086-201ENSMUST00000179931 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm23243-201ENSMUST00000180047 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24659-201ENSMUST00000180212 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm24169-201ENSMUST00000180244 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm23689-201ENSMUST00000180354 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC19.89■□□□□ 0.77
Trim28Q62318 Gm27359-201ENSMUST00000184153 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm27785-201ENSMUST00000184268 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm27466-201ENSMUST00000184396 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm27703-201ENSMUST00000184836 110 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Gm6018-201ENSMUST00000216090 1306 ntBASIC19.89■□□□□ 0.77
Trim28Q62318 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.89■□□□□ 0.77
Trim28Q62318 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Trim28Q62318 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim28Q62318 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC19.88■□□□□ 0.77
Trim28Q62318 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Trim28Q62318 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC19.88■□□□□ 0.77
Trim28Q62318 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC19.88■□□□□ 0.77
Trim28Q62318 AC140397.2-201ENSMUST00000224213 834 ntBASIC19.88■□□□□ 0.77
Trim28Q62318 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 AC133083.1-201ENSMUST00000221736 2209 ntBASIC19.88■□□□□ 0.77
Trim28Q62318 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Trim28Q62318 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim28Q62318 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms