Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC15.54■□□□□ 0.08
Six4Q61321 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.54■□□□□ 0.08
Six4Q61321 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC15.54■□□□□ 0.08
Six4Q61321 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC15.54■□□□□ 0.08
Six4Q61321 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.54■□□□□ 0.08
Six4Q61321 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.54■□□□□ 0.08
Six4Q61321 Gm5184-201ENSMUST00000220417 1702 ntBASIC15.54■□□□□ 0.08
Six4Q61321 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC15.54■□□□□ 0.08
Six4Q61321 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC15.54■□□□□ 0.08
Six4Q61321 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Six4Q61321 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Six4Q61321 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Six4Q61321 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Six4Q61321 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Six4Q61321 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC15.53■□□□□ 0.08
Six4Q61321 Gm10499-201ENSMUST00000174094 934 ntBASIC15.53■□□□□ 0.08
Six4Q61321 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Six4Q61321 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.53■□□□□ 0.08
Six4Q61321 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
Six4Q61321 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Six4Q61321 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Six4Q61321 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC15.53■□□□□ 0.08
Six4Q61321 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
Six4Q61321 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Six4Q61321 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Six4Q61321 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.52■□□□□ 0.08
Six4Q61321 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Six4Q61321 Best4-ps-201ENSMUST00000129783 1380 ntBASIC15.52■□□□□ 0.08
Six4Q61321 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Six4Q61321 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Six4Q61321 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Six4Q61321 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.52■□□□□ 0.08
Six4Q61321 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC15.52■□□□□ 0.08
Six4Q61321 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC15.52■□□□□ 0.08
Six4Q61321 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Six4Q61321 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Six4Q61321 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Six4Q61321 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Six4Q61321 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Six4Q61321 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Six4Q61321 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.07
Six4Q61321 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Six4Q61321 AC157650.3-201ENSMUST00000225058 1476 ntBASIC15.52■□□□□ 0.07
Six4Q61321 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Six4Q61321 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Six4Q61321 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Six4Q61321 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Gm7901-201ENSMUST00000120430 1597 ntBASIC15.51■□□□□ 0.07
Six4Q61321 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Gm43935-201ENSMUST00000203569 1050 ntBASIC15.51■□□□□ 0.07
Six4Q61321 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Six4Q61321 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Six4Q61321 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms