Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp28Q5I043 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
Usp28Q5I043 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Usp28Q5I043 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp28Q5I043 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp28Q5I043 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usp28Q5I043 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.51■□□□□ 0.39
Usp28Q5I043 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Usp28Q5I043 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Usp28Q5I043 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.51■□□□□ 0.39
Usp28Q5I043 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.51■□□□□ 0.39
Usp28Q5I043 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.51■□□□□ 0.39
Usp28Q5I043 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Usp28Q5I043 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usp28Q5I043 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC17.5■□□□□ 0.39
Usp28Q5I043 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Gm33142-201ENSMUST00000193913 867 ntBASIC17.5■□□□□ 0.39
Usp28Q5I043 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.5■□□□□ 0.39
Usp28Q5I043 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Usp28Q5I043 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.5■□□□□ 0.39
Usp28Q5I043 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usp28Q5I043 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Usp28Q5I043 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.49■□□□□ 0.39
Usp28Q5I043 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.49■□□□□ 0.39
Usp28Q5I043 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Gm8344-201ENSMUST00000119813 856 ntBASIC17.49■□□□□ 0.39
Usp28Q5I043 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Usp28Q5I043 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC17.49■□□□□ 0.39
Usp28Q5I043 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC17.49■□□□□ 0.39
Usp28Q5I043 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usp28Q5I043 Camk2g-217ENSMUST00000226630 1937 ntBASIC17.49■□□□□ 0.39
Usp28Q5I043 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
Usp28Q5I043 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Usp28Q5I043 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Usp28Q5I043 Gm15372-201ENSMUST00000120729 834 ntBASIC17.48■□□□□ 0.39
Usp28Q5I043 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.48■□□□□ 0.39
Usp28Q5I043 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.48■□□□□ 0.39
Usp28Q5I043 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.48■□□□□ 0.39
Usp28Q5I043 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usp28Q5I043 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms