Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm27663-201ENSMUST00000184839 110 ntBASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Gm6218-201ENSMUST00000219812 628 ntBASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Ddb1Q3U1J4 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Ighv8-7-201ENSMUST00000194349 297 ntBASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Gm38327-201ENSMUST00000195852 1755 ntBASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC19.47■□□□□ 0.71
Ddb1Q3U1J4 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Gm45293-201ENSMUST00000209754 1812 ntBASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ddb1Q3U1J4 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Gm8597-201ENSMUST00000191525 1109 ntBASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 AC158529.1-201ENSMUST00000223618 239 ntBASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ddb1Q3U1J4 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Gm6745-201ENSMUST00000199216 526 ntBASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Klk2-ps-201ENSMUST00000205342 571 ntBASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Gm42466-201ENSMUST00000202099 1301 ntBASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ddb1Q3U1J4 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Gm6912-201ENSMUST00000117218 544 ntBASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Gm23984-201ENSMUST00000157139 203 ntBASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC19.43■□□□□ 0.7
Ddb1Q3U1J4 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms