Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Vti1aO89116 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC16.61■□□□□ 0.25
Vti1aO89116 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Vti1aO89116 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC16.61■□□□□ 0.25
Vti1aO89116 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC16.61■□□□□ 0.25
Vti1aO89116 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.61■□□□□ 0.25
Vti1aO89116 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
Vti1aO89116 Gm37153-201ENSMUST00000193637 231 ntBASIC16.61■□□□□ 0.25
Vti1aO89116 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.61■□□□□ 0.25
Vti1aO89116 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Vti1aO89116 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Vti1aO89116 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.61■□□□□ 0.25
Vti1aO89116 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vti1aO89116 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Vti1aO89116 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.61■□□□□ 0.25
Vti1aO89116 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC16.6■□□□□ 0.25
Vti1aO89116 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Vti1aO89116 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.6■□□□□ 0.25
Vti1aO89116 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 AC133083.1-201ENSMUST00000221736 2209 ntBASIC16.6■□□□□ 0.25
Vti1aO89116 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Vti1aO89116 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.6■□□□□ 0.25
Vti1aO89116 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.6■□□□□ 0.25
Vti1aO89116 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Gm10175-201ENSMUST00000086013 645 ntBASIC16.6■□□□□ 0.25
Vti1aO89116 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Vti1aO89116 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Vti1aO89116 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.6■□□□□ 0.25
Vti1aO89116 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC16.6■□□□□ 0.25
Vti1aO89116 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.59■□□□□ 0.25
Vti1aO89116 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Vti1aO89116 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Vti1aO89116 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.59■□□□□ 0.25
Vti1aO89116 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.59■□□□□ 0.25
Vti1aO89116 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.59■□□□□ 0.25
Vti1aO89116 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Gm7787-201ENSMUST00000216858 688 ntBASIC16.59■□□□□ 0.25
Vti1aO89116 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Vti1aO89116 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.59■□□□□ 0.25
Vti1aO89116 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Vti1aO89116 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.58■□□□□ 0.25
Vti1aO89116 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Vti1aO89116 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Vti1aO89116 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Vti1aO89116 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC16.58■□□□□ 0.25
Vti1aO89116 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Vti1aO89116 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Vti1aO89116 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Vti1aO89116 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
Vti1aO89116 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.58■□□□□ 0.24
Vti1aO89116 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.58■□□□□ 0.24
Vti1aO89116 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Vti1aO89116 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms