Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Gm45605-201ENSMUST00000210265 4269 ntBASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Gm42901-201ENSMUST00000197735 3171 ntBASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Prpf40aQ9R1C7 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 AC159301.1-201ENSMUST00000225130 1182 ntBASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.99■□□□□ 0.31
Prpf40aQ9R1C7 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.98■□□□□ 0.31
Prpf40aQ9R1C7 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.97■□□□□ 0.31
Prpf40aQ9R1C7 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms