Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn11aQ9R053 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm22175-201ENSMUST00000175007 78 ntBASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm4691-201ENSMUST00000182339 1000 ntBASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm38294-201ENSMUST00000192831 381 ntBASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm2451-201ENSMUST00000199447 999 ntBASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm10290-201ENSMUST00000200451 999 ntBASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn11aQ9R053 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Gm15693-201ENSMUST00000120470 637 ntBASIC18.14■□□□□ 0.49
Scn11aQ9R053 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC18.14■□□□□ 0.49
Scn11aQ9R053 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn11aQ9R053 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Gm42934-201ENSMUST00000196920 1345 ntBASIC18.13■□□□□ 0.49
Scn11aQ9R053 Gm12017-201ENSMUST00000122453 1003 ntBASIC18.13■□□□□ 0.49
Scn11aQ9R053 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC18.13■□□□□ 0.49
Scn11aQ9R053 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn11aQ9R053 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC18.12■□□□□ 0.49
Scn11aQ9R053 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC18.11■□□□□ 0.49
Scn11aQ9R053 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC18.11■□□□□ 0.49
Scn11aQ9R053 Gm15483-201ENSMUST00000120338 456 ntBASIC18.11■□□□□ 0.49
Scn11aQ9R053 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Gm37277-201ENSMUST00000194052 1111 ntBASIC18.11■□□□□ 0.49
Scn11aQ9R053 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC18.11■□□□□ 0.49
Scn11aQ9R053 Wdyhv1-203ENSMUST00000226889 394 ntBASIC18.11■□□□□ 0.49
Scn11aQ9R053 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Scn11aQ9R053 Gm13233-201ENSMUST00000118760 1443 ntBASIC18.1■□□□□ 0.49
Scn11aQ9R053 Gm13244-201ENSMUST00000118855 1446 ntBASIC18.1■□□□□ 0.49
Scn11aQ9R053 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms