Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trem1Q9JKE2 Gm45203-201ENSMUST00000206384 1831 ntBASIC13.9□□□□□ -0.18
Trem1Q9JKE2 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trem1Q9JKE2 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Trem1Q9JKE2 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
Trem1Q9JKE2 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Trem1Q9JKE2 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gm37292-201ENSMUST00000192062 758 ntBASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gm5357-201ENSMUST00000212720 1924 ntBASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Gm21596-201ENSMUST00000178049 1316 ntBASIC13.89□□□□□ -0.19
Trem1Q9JKE2 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trem1Q9JKE2 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.87□□□□□ -0.19
Trem1Q9JKE2 AC166491.1-201ENSMUST00000227053 2308 ntBASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trem1Q9JKE2 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trem1Q9JKE2 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.86□□□□□ -0.19
Trem1Q9JKE2 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trem1Q9JKE2 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms