Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Gm45747-201ENSMUST00000212203 999 ntBASIC16.69■□□□□ 0.26
Trim54Q9ERP3 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Gm5177-201ENSMUST00000183092 997 ntBASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Gm18246-201ENSMUST00000221023 728 ntBASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim54Q9ERP3 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Gm14701-201ENSMUST00000117156 348 ntBASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trim54Q9ERP3 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim54Q9ERP3 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms