Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.25■□□□□ 0.19
Ddx56Q9D0R4 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm24589-201ENSMUST00000116692 94 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44357-201ENSMUST00000195897 142 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm19658-201ENSMUST00000196231 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44367-201ENSMUST00000196836 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44350-201ENSMUST00000197197 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44390-201ENSMUST00000197533 144 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44313-201ENSMUST00000198018 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44486-201ENSMUST00000198508 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44314-201ENSMUST00000199263 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44394-201ENSMUST00000199558 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44484-201ENSMUST00000199873 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44466-201ENSMUST00000200264 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm44359-201ENSMUST00000200671 138 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ddx56Q9D0R4 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Gm27646-201ENSMUST00000183989 110 ntBASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Gm6296-201ENSMUST00000222599 943 ntBASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ddx56Q9D0R4 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Gm17971-201ENSMUST00000190239 806 ntBASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Tfap2a-203ENSMUST00000223869 2037 ntBASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ddx56Q9D0R4 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ddx56Q9D0R4 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms