Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm10355-201ENSMUST00000097146 517 ntBASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ushbp1Q8R370 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ushbp1Q8R370 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Ushbp1Q8R370 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 AC154222.1-201ENSMUST00000223882 475 ntBASIC17.28■□□□□ 0.36
Ushbp1Q8R370 AC117588.1-201ENSMUST00000228510 999 ntBASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ushbp1Q8R370 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms