Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Gm9768-201ENSMUST00000206007 2861 ntBASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Gm6433-201ENSMUST00000118634 875 ntBASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.31■□□□□ 0.2
Ccdc28aQ8CEI3 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Gm15565-201ENSMUST00000118890 427 ntBASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Gm25406-201ENSMUST00000157599 105 ntBASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Gm1818-201ENSMUST00000169406 1184 ntBASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 AC153881.2-201ENSMUST00000214877 204 ntBASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ccdc28aQ8CEI3 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ccdc28aQ8CEI3 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Gm10013-201ENSMUST00000106074 672 ntBASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ccdc28aQ8CEI3 Gm5049-201ENSMUST00000195878 1590 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms