Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Gm6257-201ENSMUST00000163864 910 ntBASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Gm44430-201ENSMUST00000203376 995 ntBASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc28bQ8CEG5 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Mir6404-201ENSMUST00000183699 94 ntBASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Arhgef33-211ENSMUST00000225658 473 ntBASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc28bQ8CEG5 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Gm12669-201ENSMUST00000122162 1009 ntBASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Gm30025-201ENSMUST00000218555 728 ntBASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Gm5417-201ENSMUST00000079706 384 ntBASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc28bQ8CEG5 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 CT030684.3-201ENSMUST00000227308 2445 ntBASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Gm10052-201ENSMUST00000168019 960 ntBASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Gm7729-201ENSMUST00000050143 801 ntBASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc28bQ8CEG5 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.27■□□□□ 0.03
Ccdc28bQ8CEG5 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms