Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Gm7901-201ENSMUST00000120430 1597 ntBASIC18.2■□□□□ 0.5
Trim56Q80VI1 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim56Q80VI1 AC119177.1-201ENSMUST00000227647 1332 ntBASIC18.2■□□□□ 0.5
Trim56Q80VI1 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim56Q80VI1 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 AC131586.3-201ENSMUST00000228355 1367 ntBASIC18.19■□□□□ 0.5
Trim56Q80VI1 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Gm9727-201ENSMUST00000161387 555 ntBASIC18.19■□□□□ 0.5
Trim56Q80VI1 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim56Q80VI1 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC18.18■□□□□ 0.5
Trim56Q80VI1 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.18■□□□□ 0.5
Trim56Q80VI1 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim56Q80VI1 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Gm45293-201ENSMUST00000209754 1812 ntBASIC18.17■□□□□ 0.5
Trim56Q80VI1 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Gm12260-201ENSMUST00000122447 411 ntBASIC18.17■□□□□ 0.5
Trim56Q80VI1 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC18.17■□□□□ 0.5
Trim56Q80VI1 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.17■□□□□ 0.5
Trim56Q80VI1 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.17■□□□□ 0.5
Trim56Q80VI1 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim56Q80VI1 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms