Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.09■□□□□ 0.33
Col11a1Q61245 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.09■□□□□ 0.33
Col11a1Q61245 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC17.09■□□□□ 0.33
Col11a1Q61245 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Col11a1Q61245 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col11a1Q61245 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.08■□□□□ 0.33
Col11a1Q61245 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col11a1Q61245 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col11a1Q61245 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC17.08■□□□□ 0.33
Col11a1Q61245 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
Col11a1Q61245 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC17.08■□□□□ 0.33
Col11a1Q61245 Gm9522-201ENSMUST00000182394 926 ntBASIC17.08■□□□□ 0.33
Col11a1Q61245 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col11a1Q61245 Gm18624-201ENSMUST00000220966 658 ntBASIC17.08■□□□□ 0.33
Col11a1Q61245 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col11a1Q61245 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col11a1Q61245 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col11a1Q61245 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Col11a1Q61245 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col11a1Q61245 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col11a1Q61245 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Col11a1Q61245 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col11a1Q61245 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC17.07■□□□□ 0.32
Col11a1Q61245 Gm9908-201ENSMUST00000211534 448 ntBASIC17.07■□□□□ 0.32
Col11a1Q61245 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 AC153962.4-201ENSMUST00000217878 242 ntBASIC17.07■□□□□ 0.32
Col11a1Q61245 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col11a1Q61245 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Gm20445-201ENSMUST00000061905 565 ntBASIC17.07■□□□□ 0.32
Col11a1Q61245 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col11a1Q61245 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.06■□□□□ 0.32
Col11a1Q61245 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Gm21854-201ENSMUST00000179901 471 ntBASIC17.06■□□□□ 0.32
Col11a1Q61245 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.06■□□□□ 0.32
Col11a1Q61245 Gm8602-201ENSMUST00000184045 607 ntBASIC17.06■□□□□ 0.32
Col11a1Q61245 AY702102-202ENSMUST00000194651 1173 ntBASIC17.06■□□□□ 0.32
Col11a1Q61245 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC17.06■□□□□ 0.32
Col11a1Q61245 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
Col11a1Q61245 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col11a1Q61245 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Col11a1Q61245 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col11a1Q61245 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col11a1Q61245 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.05■□□□□ 0.32
Col11a1Q61245 Mir1897-201ENSMUST00000122581 272 ntBASIC17.05■□□□□ 0.32
Col11a1Q61245 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Cd63-ps-201ENSMUST00000145417 875 ntBASIC17.05■□□□□ 0.32
Col11a1Q61245 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC17.05■□□□□ 0.32
Col11a1Q61245 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Col11a1Q61245 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col11a1Q61245 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms