Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.04□□□□□ -0.16
Usf1Q61069 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC14.04□□□□□ -0.16
Usf1Q61069 Gm12151-201ENSMUST00000121374 290 ntBASIC14.04□□□□□ -0.16
Usf1Q61069 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Usf1Q61069 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC14.04□□□□□ -0.16
Usf1Q61069 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.04□□□□□ -0.16
Usf1Q61069 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.04□□□□□ -0.16
Usf1Q61069 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC14.04□□□□□ -0.16
Usf1Q61069 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Usf1Q61069 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.03□□□□□ -0.16
Usf1Q61069 Haglr-201ENSMUST00000100000 2085 ntBASIC14.03□□□□□ -0.16
Usf1Q61069 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Usf1Q61069 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Usf1Q61069 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.03□□□□□ -0.16
Usf1Q61069 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Gm8318-201ENSMUST00000182954 872 ntBASIC14.03□□□□□ -0.16
Usf1Q61069 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Usf1Q61069 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC14.03□□□□□ -0.16
Usf1Q61069 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.03□□□□□ -0.16
Usf1Q61069 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC14.03□□□□□ -0.16
Usf1Q61069 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usf1Q61069 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.02□□□□□ -0.16
Usf1Q61069 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC14.02□□□□□ -0.16
Usf1Q61069 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usf1Q61069 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Usf1Q61069 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usf1Q61069 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Usf1Q61069 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usf1Q61069 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Usf1Q61069 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.02□□□□□ -0.17
Usf1Q61069 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Usf1Q61069 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usf1Q61069 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usf1Q61069 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usf1Q61069 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Usf1Q61069 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usf1Q61069 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
Usf1Q61069 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Usf1Q61069 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Usf1Q61069 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC14.01□□□□□ -0.17
Usf1Q61069 Gm13823-201ENSMUST00000119930 345 ntBASIC14.01□□□□□ -0.17
Usf1Q61069 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC14.01□□□□□ -0.17
Usf1Q61069 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC14.01□□□□□ -0.17
Usf1Q61069 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.01□□□□□ -0.17
Usf1Q61069 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC14.01□□□□□ -0.17
Usf1Q61069 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Usf1Q61069 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usf1Q61069 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms