Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.56■□□□□ 0.4
Usp28Q5I043 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Usp28Q5I043 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Usp28Q5I043 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Gm7284-201ENSMUST00000131667 944 ntBASIC17.56■□□□□ 0.4
Usp28Q5I043 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.56■□□□□ 0.4
Usp28Q5I043 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.56■□□□□ 0.4
Usp28Q5I043 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.56■□□□□ 0.4
Usp28Q5I043 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.56■□□□□ 0.4
Usp28Q5I043 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp28Q5I043 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.55■□□□□ 0.4
Usp28Q5I043 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Gm14722-201ENSMUST00000118943 689 ntBASIC17.55■□□□□ 0.4
Usp28Q5I043 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.55■□□□□ 0.4
Usp28Q5I043 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC17.55■□□□□ 0.4
Usp28Q5I043 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.55■□□□□ 0.4
Usp28Q5I043 Gm19164-201ENSMUST00000210667 640 ntBASIC17.55■□□□□ 0.4
Usp28Q5I043 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
Usp28Q5I043 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Usp28Q5I043 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Usp28Q5I043 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp28Q5I043 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Usp28Q5I043 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Usp28Q5I043 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC17.54■□□□□ 0.4
Usp28Q5I043 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.54■□□□□ 0.4
Usp28Q5I043 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.54■□□□□ 0.4
Usp28Q5I043 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp28Q5I043 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Usp28Q5I043 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC17.53■□□□□ 0.4
Usp28Q5I043 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC17.53■□□□□ 0.4
Usp28Q5I043 Gm12497-201ENSMUST00000138778 237 ntBASIC17.53■□□□□ 0.4
Usp28Q5I043 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC17.53■□□□□ 0.4
Usp28Q5I043 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.53■□□□□ 0.4
Usp28Q5I043 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp28Q5I043 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC17.52■□□□□ 0.4
Usp28Q5I043 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Gm27357-201ENSMUST00000183754 135 ntBASIC17.52■□□□□ 0.4
Usp28Q5I043 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.52■□□□□ 0.4
Usp28Q5I043 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
Usp28Q5I043 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usp28Q5I043 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Usp28Q5I043 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Usp28Q5I043 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms