Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Shmt1P50431 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Shmt1P50431 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Shmt1P50431 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Shmt1P50431 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Shmt1P50431 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Shmt1P50431 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Gm15467-201ENSMUST00000120582 445 ntBASIC16.32■□□□□ 0.2
Shmt1P50431 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.32■□□□□ 0.2
Shmt1P50431 Gm12260-201ENSMUST00000122447 411 ntBASIC16.32■□□□□ 0.2
Shmt1P50431 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.32■□□□□ 0.2
Shmt1P50431 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC16.32■□□□□ 0.2
Shmt1P50431 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Shmt1P50431 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.32■□□□□ 0.2
Shmt1P50431 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.32■□□□□ 0.2
Shmt1P50431 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.32■□□□□ 0.2
Shmt1P50431 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Shmt1P50431 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.31■□□□□ 0.2
Shmt1P50431 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Shmt1P50431 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.31■□□□□ 0.2
Shmt1P50431 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.31■□□□□ 0.2
Shmt1P50431 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
Shmt1P50431 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC16.31■□□□□ 0.2
Shmt1P50431 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC16.31■□□□□ 0.2
Shmt1P50431 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Shmt1P50431 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Shmt1P50431 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Shmt1P50431 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.31■□□□□ 0.2
Shmt1P50431 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 AC131586.3-201ENSMUST00000228355 1367 ntBASIC16.3■□□□□ 0.2
Shmt1P50431 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Gm9727-201ENSMUST00000161387 555 ntBASIC16.3■□□□□ 0.2
Shmt1P50431 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Shmt1P50431 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.3■□□□□ 0.2
Shmt1P50431 Gm2213-201ENSMUST00000197485 688 ntBASIC16.3■□□□□ 0.2
Shmt1P50431 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
Shmt1P50431 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Shmt1P50431 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Shmt1P50431 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
Shmt1P50431 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Shmt1P50431 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Shmt1P50431 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Shmt1P50431 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Shmt1P50431 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Gm13597-201ENSMUST00000121239 375 ntBASIC16.29■□□□□ 0.2
Shmt1P50431 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Shmt1P50431 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.29■□□□□ 0.2
Shmt1P50431 Gm7787-201ENSMUST00000216858 688 ntBASIC16.29■□□□□ 0.2
Shmt1P50431 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.29■□□□□ 0.2
Shmt1P50431 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Shmt1P50431 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Shmt1P50431 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Shmt1P50431 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms