Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cd40lgP27548 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm4459-201ENSMUST00000118750 468 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm8825-201ENSMUST00000182565 998 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm4518-201ENSMUST00000182638 718 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.24□□□□□ -0.13
Cd40lgP27548 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC14.24□□□□□ -0.13
Cd40lgP27548 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.24□□□□□ -0.13
Cd40lgP27548 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC14.24□□□□□ -0.13
Cd40lgP27548 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Cd40lgP27548 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Cd40lgP27548 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 AC153526.5-201ENSMUST00000218661 2147 ntBASIC14.23□□□□□ -0.13
Cd40lgP27548 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Cd40lgP27548 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC14.23□□□□□ -0.13
Cd40lgP27548 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Cd40lgP27548 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Cd40lgP27548 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cd40lgP27548 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.22□□□□□ -0.13
Cd40lgP27548 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cd40lgP27548 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cd40lgP27548 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Cd40lgP27548 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Cd40lgP27548 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms