Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim54Q9ERP3 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim54Q9ERP3 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim54Q9ERP3 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trim54Q9ERP3 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trim54Q9ERP3 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trim54Q9ERP3 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trim54Q9ERP3 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim54Q9ERP3 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Trim54Q9ERP3 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms