Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm42473-201ENSMUST00000201056 2291 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44357-201ENSMUST00000195897 142 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm19658-201ENSMUST00000196231 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44367-201ENSMUST00000196836 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44350-201ENSMUST00000197197 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44390-201ENSMUST00000197533 144 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44313-201ENSMUST00000198018 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44486-201ENSMUST00000198508 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44314-201ENSMUST00000199263 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44394-201ENSMUST00000199558 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44484-201ENSMUST00000199873 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44466-201ENSMUST00000200264 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm44359-201ENSMUST00000200671 138 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Smc1aQ9CU62 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Gm1401-201ENSMUST00000122048 772 ntBASIC17.3■□□□□ 0.36
Smc1aQ9CU62 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Gm43073-201ENSMUST00000198200 1189 ntBASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Smc1aQ9CU62 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Gm10060-201ENSMUST00000212002 111 ntBASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms