Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Gm13223-201ENSMUST00000118609 747 ntBASIC16.3■□□□□ 0.2
Clp1Q99LI9 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Gm5745-201ENSMUST00000183748 313 ntBASIC16.3■□□□□ 0.2
Clp1Q99LI9 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Clp1Q99LI9 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Clp1Q99LI9 AC125206.2-201ENSMUST00000217454 574 ntBASIC16.3■□□□□ 0.2
Clp1Q99LI9 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.3■□□□□ 0.2
Clp1Q99LI9 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Gm18737-201ENSMUST00000173594 937 ntBASIC16.29■□□□□ 0.2
Clp1Q99LI9 Gm37277-201ENSMUST00000194052 1111 ntBASIC16.29■□□□□ 0.2
Clp1Q99LI9 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Clp1Q99LI9 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Gm2810-201ENSMUST00000118681 990 ntBASIC16.28■□□□□ 0.2
Clp1Q99LI9 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Gm27618-201ENSMUST00000183671 60 ntBASIC16.28■□□□□ 0.2
Clp1Q99LI9 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Clp1Q99LI9 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Clp1Q99LI9 AC140375.2-201ENSMUST00000225283 584 ntBASIC16.27■□□□□ 0.2
Clp1Q99LI9 AC154532.1-201ENSMUST00000227860 965 ntBASIC16.27■□□□□ 0.2
Clp1Q99LI9 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Clp1Q99LI9 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.27■□□□□ 0.2
Clp1Q99LI9 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.27■□□□□ 0.19
Clp1Q99LI9 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Clp1Q99LI9 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clp1Q99LI9 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Clp1Q99LI9 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Wdyhv1-203ENSMUST00000226889 394 ntBASIC16.26■□□□□ 0.19
Clp1Q99LI9 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Clp1Q99LI9 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms