Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 AC127349.1-201ENSMUST00000224590 266 ntBASIC18.01■□□□□ 0.47
Vps53Q8CCB4 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC18.01■□□□□ 0.47
Vps53Q8CCB4 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
Vps53Q8CCB4 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Psmb5-202ENSMUST00000227257 622 ntBASIC18■□□□□ 0.47
Vps53Q8CCB4 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC18■□□□□ 0.47
Vps53Q8CCB4 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Vps53Q8CCB4 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Vps53Q8CCB4 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Prob1-201ENSMUST00000097619 3021 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm25990-201ENSMUST00000102440 86 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm15467-201ENSMUST00000120582 445 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm7230-201ENSMUST00000173026 815 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm4535-201ENSMUST00000182274 558 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Mir6404-201ENSMUST00000183699 94 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm10355-201ENSMUST00000097146 517 ntBASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Vps53Q8CCB4 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Vps53Q8CCB4 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Vps53Q8CCB4 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms