Protein–RNA interactions for Protein: Q80YF6

Upk3b, Uroplakin-3b, mousemouse

Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3bQ80YF6 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Upk3bQ80YF6 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upk3bQ80YF6 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upk3bQ80YF6 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Upk3bQ80YF6 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Gm22697-201ENSMUST00000175194 63 ntBASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 AC127302.2-201ENSMUST00000215212 268 ntBASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Gm7367-201ENSMUST00000057611 492 ntBASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Zkscan4-202ENSMUST00000225845 1506 ntBASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Gm14026-201ENSMUST00000120625 1789 ntBASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upk3bQ80YF6 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Gm11860-201ENSMUST00000122346 1010 ntBASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Gm11960-202ENSMUST00000181063 2858 ntBASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upk3bQ80YF6 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Upk3bQ80YF6 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms