Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Mir449b-201ENSMUST00000104833 80 ntBASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Gm20949-201ENSMUST00000206478 952 ntBASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Upf3aQ3ULJ3 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm22065-201ENSMUST00000103753 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm22066-201ENSMUST00000103761 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24932-201ENSMUST00000103763 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24115-201ENSMUST00000103799 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm22190-201ENSMUST00000103827 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm22191-201ENSMUST00000103831 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24721-201ENSMUST00000103849 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm28018-201ENSMUST00000103869 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm26399-201ENSMUST00000103937 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm25349-201ENSMUST00000177728 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm23616-201ENSMUST00000177797 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm25871-201ENSMUST00000177816 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24752-201ENSMUST00000178240 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24496-201ENSMUST00000178287 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm25649-201ENSMUST00000178476 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm25548-201ENSMUST00000178681 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm23147-201ENSMUST00000178841 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm26095-201ENSMUST00000179270 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm22171-201ENSMUST00000179283 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm23936-201ENSMUST00000179354 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm22619-201ENSMUST00000179516 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm25255-201ENSMUST00000179579 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24755-201ENSMUST00000179691 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm26506-201ENSMUST00000179692 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm25086-201ENSMUST00000179931 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm23243-201ENSMUST00000180047 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24659-201ENSMUST00000180212 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm24169-201ENSMUST00000180244 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm23689-201ENSMUST00000180354 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm27359-201ENSMUST00000184153 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm27785-201ENSMUST00000184268 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm27466-201ENSMUST00000184396 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm27703-201ENSMUST00000184836 110 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Mir7023-201ENSMUST00000185093 64 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Gm10154-201ENSMUST00000084445 354 ntBASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Upf3aQ3ULJ3 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms