Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddb1Q3U1J4 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ddb1Q3U1J4 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ddb1Q3U1J4 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Ddb1Q3U1J4 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ddb1Q3U1J4 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Ddb1Q3U1J4 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC19.58■□□□□ 0.73
Ddb1Q3U1J4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Ddb1Q3U1J4 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Gm27680-201ENSMUST00000184192 160 ntBASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddb1Q3U1J4 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Gm8096-201ENSMUST00000209921 1591 ntBASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddb1Q3U1J4 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Gm14928-201ENSMUST00000120198 477 ntBASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Gm44344-201ENSMUST00000200287 129 ntBASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddb1Q3U1J4 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Gm27533-201ENSMUST00000183800 152 ntBASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
Ddb1Q3U1J4 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddb1Q3U1J4 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms