Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Nkx3-1P97436 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nkx3-1P97436 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC13.36□□□□□ -0.27
Nkx3-1P97436 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.36□□□□□ -0.27
Nkx3-1P97436 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 AC127302.2-201ENSMUST00000215212 268 ntBASIC13.36□□□□□ -0.27
Nkx3-1P97436 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Gm13294-201ENSMUST00000121757 1330 ntBASIC13.36□□□□□ -0.27
Nkx3-1P97436 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC13.36□□□□□ -0.27
Nkx3-1P97436 AC069562.2-201ENSMUST00000224644 2146 ntBASIC13.36□□□□□ -0.27
Nkx3-1P97436 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nkx3-1P97436 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Gm27494-201ENSMUST00000184735 189 ntBASIC13.35□□□□□ -0.27
Nkx3-1P97436 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.35□□□□□ -0.27
Nkx3-1P97436 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.35□□□□□ -0.27
Nkx3-1P97436 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nkx3-1P97436 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Mir1895-201ENSMUST00000122615 79 ntBASIC13.34□□□□□ -0.27
Nkx3-1P97436 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC13.34□□□□□ -0.27
Nkx3-1P97436 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Gm45747-201ENSMUST00000212203 999 ntBASIC13.34□□□□□ -0.27
Nkx3-1P97436 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
Nkx3-1P97436 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nkx3-1P97436 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms