Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ercc3P49135 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ercc3P49135 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ercc3P49135 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ercc3P49135 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ercc3P49135 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC18.37■□□□□ 0.53
Ercc3P49135 Gm6550-201ENSMUST00000187574 993 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 Gm44771-201ENSMUST00000206975 626 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 AC154757.1-201ENSMUST00000228289 336 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 Gm15590-201ENSMUST00000078419 552 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ercc3P49135 Gm3928-201ENSMUST00000121141 1307 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ercc3P49135 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Prkcz2-201ENSMUST00000206136 1756 ntBASIC18.37■□□□□ 0.53
Ercc3P49135 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ercc3P49135 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Ercc3P49135 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Ercc3P49135 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC18.36■□□□□ 0.53
Ercc3P49135 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
Ercc3P49135 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.36■□□□□ 0.53
Ercc3P49135 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 AC127302.2-201ENSMUST00000215212 268 ntBASIC18.36■□□□□ 0.53
Ercc3P49135 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ercc3P49135 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC18.35■□□□□ 0.53
Ercc3P49135 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ercc3P49135 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Gm8344-201ENSMUST00000119813 856 ntBASIC18.35■□□□□ 0.53
Ercc3P49135 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Gm9449-201ENSMUST00000207265 1011 ntBASIC18.35■□□□□ 0.53
Ercc3P49135 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ercc3P49135 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ercc3P49135 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC18.35■□□□□ 0.53
Ercc3P49135 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
Ercc3P49135 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ercc3P49135 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Ercc3P49135 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Ercc3P49135 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Gm12350-201ENSMUST00000121208 462 ntBASIC18.34■□□□□ 0.53
Ercc3P49135 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC18.34■□□□□ 0.53
Ercc3P49135 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Gm19164-201ENSMUST00000210667 640 ntBASIC18.34■□□□□ 0.53
Ercc3P49135 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Ercc3P49135 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Gm13337-201ENSMUST00000119183 1594 ntBASIC18.34■□□□□ 0.53
Ercc3P49135 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ercc3P49135 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Ercc3P49135 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ercc3P49135 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ercc3P49135 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.33■□□□□ 0.53
Ercc3P49135 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ercc3P49135 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ercc3P49135 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ercc3P49135 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms